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Description

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM is described in the SAMtools project page. Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported.

Home Page

Documentation

License

Unknown

Usage

Use

module avail picard-tools

to see which versions of picard-tools are available. Use

module load picard-tools

or

module load picard-tools/version

to get access to picard-tools. To run picard-tools in a job script, use

java -jar $PICARD_ROOT/picard.jar options ...

OR

java -jar $PICARD_JAR options ...